Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs1940394 chr11:133897253 A/G 7.0E-5 258 11.38 24.37 33.95 KM Plot
SARC rs1953660 chr13:54229059 A/G 0 258 1.07 23.7 32.5 KM Plot
SARC rs1969269 chr17:45335537 C/A 7.06E-6 254 32.4 34 13.85 KM Plot
SARC rs1978504 chr7:134006933 C/T 4.34E-5 258 25.63 30.93 33.9 KM Plot
SARC rs1995454 chr3:71948966 T/C 2.86E-6 254 17.2 36.02 31.62 KM Plot
SARC rs199662774 chr8:129360357 C/A 2.22E-13 256 33.9 19.62 3.97 KM Plot
SARC rs2010598 chr16:4637400 G/C 7.92E-5 251 18.33 36.4 30.77 KM Plot
SARC rs2044869 chr8:128247045 G/T 3.23E-5 258 13.6 31.27 35.77 KM Plot
SARC rs2052426 chr2:217069720 A/G 0 258 0.57 29.8 32.3 KM Plot
SARC rs2064829 chr20:60969603 T/C 1.46E-5 246 27.5 45.75 18.63 KM Plot
SARC rs2064830 chr20:60969457 T/C 6.54E-5 248 27.5 45.75 18.63 KM Plot
SARC rs2072797 chr22:39134207 A/G 3.4E-5 258 19.02 25.57 33.17 KM Plot
SARC rs2136750 chr17:45456100 A/G 7.04E-5 257 19.83 34 32.13 KM Plot
SARC rs2155425 chr11:71217959 C/T 1.81E-5 256 8.62 26.25 33.48 KM Plot
SARC rs2187314 chr21:45553430 A/C 8.07E-5 252 6 41.45 30.73 KM Plot